#!/bin/bash
# ----------------------------------------------------------------
#   1-CreateDirecotryStructure.sh: Create the directory structure
#   	and relocate each files to the right place
#
#	Usage:
#		1-CreateDirectoryStructure.sh rawDataSrc projectDir subjID
#   initializes the Adaptation fMRI experiment. This experiment 
#   effect of stimulus history on the current evoked response,
#   on serial position -1 to -N are manipulated in a 
#
#
#   Inputs
#   -------
#   [protocolListFileName]: path to a file that should contain a
#   	description of the protocols to be used. If nothing is
#   	the file ./Config/ProtocolList.cfg will be used
#
#
#   Outputs
#   -------
#   ./Data/[expType]/[protocol]/[subjID]/[subjID]-[protocol]-
#  	this file will store all experimental info, experiment
#   	parameters, stimuli used, and data collected
#
#   Examples
#   -------
#    i) AdaptID_v1_1('./protocols.txt')
#   ii) AdaptID_v1_1
#
# ----------------------------------------------------------------
# ``Redistribution and use, with or without modification, are
#	permitted provided that the list of contributors below is
#	preserved.``
#
#   Original code by Marcelo G Mattar (09/04/2012)
#	mattar@sas.upenn.edu
# ----------------------------------------------------------------

# List of scans
scanName[1]=localizer;		scanType[1]=Anatomy
scanName[2]=MPRAGE;			scanType[2]=Anatomy
scanName[3]=MPRAGE2;		scanType[3]=Anatomy
scanName[4]=B0mag;			scanType[4]=B0map
scanName[5]=B0phase;		scanType[5]=B0map
scanName[6]=EPI_wholebrain; scanType[6]=Anatomy
scanName[7]=EPI_singlerep;	scanType[7]=Anatomy
scanName[8]=FOBSLoc;		scanType[8]=FOBSLoc
scanName[9]=Face1;			scanType[9]=ShortTermAdapt
scanName[10]=Face2;			scanType[10]=ShortTermAdapt
scanName[11]=Face3;			scanType[11]=ShortTermAdapt 
scanName[12]=Face4;			scanType[12]=ShortTermAdapt
scanName[13]=Color1;		scanType[13]=ShortTermAdapt
scanName[14]=Color2;		scanType[14]=ShortTermAdapt
scanName[15]=Color3;		scanType[15]=ShortTermAdapt
scanName[16]=LongTermAdapt;	scanType[16]=LongTermAdapt